summaryrefslogtreecommitdiff
path: root/gnu/packages/bioconductor.scm
diff options
context:
space:
mode:
authorzimoun <zimon.toutoune@gmail.com>2021-05-21 22:25:59 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-05-31 15:37:59 +0200
commitd1ea2b7c8b76dea810102379112b05d344b02530 (patch)
tree1ea610b3ea5eaa1a73a3d030ba7635c269228110 /gnu/packages/bioconductor.scm
parent0b5b41c5614be969e611f3dc3e1462eb8135b3e8 (diff)
downloadguix-patches-d1ea2b7c8b76dea810102379112b05d344b02530.tar
guix-patches-d1ea2b7c8b76dea810102379112b05d344b02530.tar.gz
gnu: r-dirichletmultinomial: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Move from here... * gnu/packages/bioconductor.scm (r-dirichletmultinomial): ...to here.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm29
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c369ac0cb4..fea0fe78ac 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2440,6 +2440,35 @@ testing. The package also provides functions for the visualization and
exploration of the results.")
(license license:gpl3+)))
+(define-public r-dirichletmultinomial
+ (package
+ (name "r-dirichletmultinomial")
+ (version "1.32.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DirichletMultinomial" version))
+ (sha256
+ (base32
+ "098zql6ryd1b0gkq4cjybblyh0x8xidxxfygqq5a5x9asl8y4vsk"))))
+ (properties
+ `((upstream-name . "DirichletMultinomial")))
+ (build-system r-build-system)
+ (inputs
+ `(("gsl" ,gsl)))
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://bioconductor.org/packages/DirichletMultinomial")
+ (synopsis "Dirichlet-Multinomial mixture models for microbiome data")
+ (description
+ "Dirichlet-multinomial mixture models can be used to describe variability
+in microbial metagenomic data. This package is an interface to code
+originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2):
+1-15.")
+ (license license:lgpl3)))
+
(define-public r-edaseq
(package
(name "r-edaseq")