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author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-04-17 10:13:43 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2022-04-26 09:48:13 +0200 |
commit | 2902adfc7e0e4e9526ead9d35be14ac4f9b77c1c (patch) | |
tree | 7db437a86e9ce0660f4d442acf5df17afd083851 /gnu/packages/bioconductor.scm | |
parent | 63091319491e260ec1c510219e5a297d04b22109 (diff) | |
download | guix-patches-2902adfc7e0e4e9526ead9d35be14ac4f9b77c1c.tar guix-patches-2902adfc7e0e4e9526ead9d35be14ac4f9b77c1c.tar.gz |
gnu: Add r-adam.
* gnu/packages/bioconductor.scm (r-adam): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r-- | gnu/packages/bioconductor.scm | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index bec3496057..cd28d3eb20 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1581,6 +1581,41 @@ expression level and gene-specific dispersion, that might facilitate the gene ranking by fold-change and visualization.") (license license:gpl3+))) +(define-public r-adam + (package + (name "r-adam") + (version "1.10.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ADAM" version)) + (sha256 + (base32 + "18zwci0ab54q7rdwj0n63w0i14lfrb4cccp09bcrq10gl1ki07f5")))) + (properties `((upstream-name . "ADAM"))) + (build-system r-build-system) + (propagated-inputs (list r-dplyr + r-dt + r-go-db + r-keggrest + r-knitr + r-pbapply + r-rcpp + r-stringr + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/ADAM") + (synopsis "Gene activity and diversity analysis module") + (description + "This software @code{ADAM} is a @dfn{Gene set enrichment analysis} (GSEA) +package created to group a set of genes from comparative samples (control +versus experiment) belonging to different species according to their respective +functions. The corresponding roles are extracted from the default collections +like Gene ontology and @dfn{Kyoto encyclopedia of genes and genomes} (KEGG). +@code{ADAM} show their significance by calculating the p-values referring to +gene diversity and activity. Each group of genes is called @dfn{Group of +functionally associated genes} (GFAG).") + (license license:gpl2+))) + (define-public r-aneufinder (package (name "r-aneufinder") |