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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2022-06-23 11:42:57 +0200
committerGuix Patches Tester <>2022-06-23 11:23:08 +0100
commit80787bede615fbb1e336146946e8c5f9e3c2569f (patch)
treef6ee29a70197816d7a08379a251c886ed8dd32b9
parent0ea51a817784125a32bbc96a524b2fe95a26034a (diff)
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gnu: Add r-assessorf.series-12813
* gnu/packages/bioconductor.scm (r-assessorf): New variable.
-rw-r--r--gnu/packages/bioconductor.scm29
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..3f7743b0cb 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,35 @@ calling, plotting, export and analysis from whole-genome single cell
sequencing data.")
(license license:artistic2.0)))
+(define-public r-assessorf
+ (package
+ (name "r-assessorf")
+ (version "1.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AssessORF" version))
+ (sha256
+ (base32
+ "1l87bpny9k3jbzbzmb9h2ijvblrj471gqv26fyzbvb3vr6y406z7"))))
+ (properties `((upstream-name . "AssessORF")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biostrings
+ r-decipher
+ r-genomicranges
+ r-iranges))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/AssessORF")
+ (synopsis "Assess gene predictions using proteomics and evolutionary conservation")
+ (description
+ "In order to assess the quality of a set of predicted genes for a genome,
+evidence must first be mapped to that genome. Next, each gene must be categorized
+based on how strong the evidence is for or against that gene. The @code{AssessORF}
+package provides the functions and class structures necessary for accomplishing
+those tasks, using proteomics hits and evolutionarily conserved start codons as
+the forms of evidence.")
+ (license license:gpl3)))
+
(define-public r-biocversion
(package
(name "r-biocversion")