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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-06-17 16:05:58 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-07-01 10:28:21 +0200 |
| commit | 3109d4a30ec54b74a8bb844a89181c074958279e (patch) | |
| tree | 1a63cfdc0f5af4b97053be2737a939ea7f9fcf97 | |
| parent | f004033b4779dc1c6d67a525da5a45034cb68809 (diff) | |
| download | guix-patches-3109d4a30ec54b74a8bb844a89181c074958279e.tar guix-patches-3109d4a30ec54b74a8bb844a89181c074958279e.tar.gz | |
gnu: Add r-annmap.
* gnu/packages/bioconductor.scm (r-annmap): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 17e1c0f530..8aa0b5bd85 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2163,6 +2163,40 @@ used for complex patient clustering by integrating multi-omic data through affin network fusion.") (license license:gpl3))) +(define-public r-annmap + (package + (name "r-annmap") + (version "1.38.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "annmap" version)) + (sha256 + (base32 + "0ywqbb8jia7rrkzcsf6a11kqf8dnx96z8n8xw7067mahycykbixv")))) + (properties `((upstream-name . "annmap"))) + (build-system r-build-system) + (propagated-inputs + (list r-biobase + r-biocgenerics + r-dbi + r-digest + r-genefilter + r-genomicranges + r-iranges + r-lattice + r-rmysql + r-rsamtools)) + (home-page "https://github.com/cruk-mi/annmap") + (synopsis + "Genome annotation and visualisation for Affymetrix arrays and NGS analysis") + (description + "This package @code{annmap} provides annotation mappings for Affymetrix exon +arrays and coordinate based queries to support deep sequencing data analysis. +Database access is hidden behind the API which provides a set of functions such +as @code{genesInRange()}, @code{geneToExon()}, @code{exonDetails()}, etc. +Functions to plot gene architecture and BAM file data are also provided.") + (license license:gpl2))) + (define-public r-biocversion (package (name "r-biocversion") |