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author | Ricardo Wurmus <rekado@elephly.net> | 2021-06-28 19:23:24 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2021-06-28 19:23:49 +0200 |
commit | 4fb2b5cef88d7d05d0d6db8ee51a5cd7a7dd862e (patch) | |
tree | ae140d2e0cda449fc287838ebf9fa81cc9ac4f31 | |
parent | 184fac5927b4327f434dfb426d5626bc21c4f31f (diff) | |
download | guix-patches-4fb2b5cef88d7d05d0d6db8ee51a5cd7a7dd862e.tar guix-patches-4fb2b5cef88d7d05d0d6db8ee51a5cd7a7dd862e.tar.gz |
gnu: r-cistopic: Update to 2.1.0.
* gnu/packages/bioconductor.scm (r-cistopic): Update to 2.1.0.
-rw-r--r-- | gnu/packages/bioconductor.scm | 72 |
1 files changed, 35 insertions, 37 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e8d353f49a..284a0e7f12 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10208,48 +10208,46 @@ analysis, evolutionary conservation, biogenesis to functional analysis.") (license license:gpl3))) (define-public r-cistopic - (let ((commit "29abd8df9afb60ff27ac3f0a590930debe926950") - (revision "0")) - (package - (name "r-cistopic") - (version (git-version "0.2.1" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/aertslab/cisTopic") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0s8irpsv5d2zcv4ihanvsf1vrpignzliscxnvs4519af3jmx78h8")))) - (build-system r-build-system) - (propagated-inputs - `(("r-aucell" ,r-aucell) - ("r-data-table" ,r-data-table) - ("r-dplyr" ,r-dplyr) - ("r-dosnow" ,r-dosnow) - ("r-dt" ,r-dt) - ("r-feather" ,r-feather) - ("r-fitdistrplus" ,r-fitdistrplus) - ("r-genomicranges" ,r-genomicranges) - ("r-ggplot2" ,r-ggplot2) - ("r-lda" ,r-lda) - ("r-matrix" ,r-matrix) - ("r-plyr" ,r-plyr) - ("r-rcistarget" ,r-rcistarget) - ("r-rtracklayer" ,r-rtracklayer) - ("r-s4vectors" ,r-s4vectors))) - (home-page "https://github.com/aertslab/cisTopic") - (synopsis "Modelling of cis-regulatory topics from single cell epigenomics data") - (description - "The sparse nature of single cell epigenomics data can be overruled using + (package + (name "r-cistopic") + (version "2.1.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/aertslab/cisTopic") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0c4553rnxq7b1w451kcc3iwvak4qa5h2b43xmfw6ii8096zd1gbf")))) + (build-system r-build-system) + (propagated-inputs + `(("r-aucell" ,r-aucell) + ("r-data-table" ,r-data-table) + ("r-dplyr" ,r-dplyr) + ("r-dosnow" ,r-dosnow) + ("r-dt" ,r-dt) + ("r-feather" ,r-feather) + ("r-fitdistrplus" ,r-fitdistrplus) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-lda" ,r-lda) + ("r-matrix" ,r-matrix) + ("r-plyr" ,r-plyr) + ("r-rcistarget" ,r-rcistarget) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://github.com/aertslab/cisTopic") + (synopsis "Modelling of cis-regulatory topics from single cell epigenomics data") + (description + "The sparse nature of single cell epigenomics data can be overruled using probabilistic modelling methods such as @dfn{Latent Dirichlet Allocation} (LDA). This package allows the probabilistic modelling of cis-regulatory topics (cisTopics) from single cell epigenomics data, and includes functionalities to identify cell states based on the contribution of cisTopics and explore the nature and regulatory proteins driving them.") - (license license:gpl3)))) + (license license:gpl3))) (define-public r-genie3 (package |