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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-06-16 15:17:42 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-06-16 15:20:59 +0200 |
| commit | fbe5707b73a5c2e8432ebac2e28b80ad19d89c97 (patch) | |
| tree | 18095b15411868975a0a055ae8995a3829eceed4 | |
| parent | d62dbedd6d3a64e26c386b1c7091ef9eebd65da9 (diff) | |
| download | guix-patches-fbe5707b73a5c2e8432ebac2e28b80ad19d89c97.tar guix-patches-fbe5707b73a5c2e8432ebac2e28b80ad19d89c97.tar.gz | |
gnu: Add python-ctxcore.
* gnu/packages/bioinformatics.scm (python-ctxcore): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 87df6c3515..6dde6b6976 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -111,6 +111,7 @@ #:use-module (gnu packages jupyter) #:use-module (gnu packages libffi) #:use-module (gnu packages linux) + #:use-module (gnu packages llvm) #:use-module (gnu packages logging) #:use-module (gnu packages lsof) #:use-module (gnu packages machine-learning) @@ -13380,6 +13381,49 @@ information... The package can also be used to extract data from @code{.loom} files.") (license license:expat)))) +(define-public python-ctxcore + (package + (name "python-ctxcore") + (version "0.1.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/aertslab/ctxcore") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "16nlj7z8pirgjad7vlgm7226b3hpw4a7n967vyfg26dsf5n8k70d")))) + (build-system python-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'pretend-version + ;; The version string is usually derived via setuptools-scm, but + ;; it doesn't work without the .git directory. + (lambda _ + (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))))) + (propagated-inputs + (list python-cytoolz + python-numba + python-frozendict + python-numpy + python-pandas + python-pyyaml + python-pyarrow-0.16 + python-tqdm)) + (native-inputs + (list python-pytest + python-setuptools-scm)) + (home-page "https://github.com/aertslab/ctxcore") + (synopsis "Core functions for pycisTarget and the SCENIC tool suite") + (description + "ctxcore is part of the SCENIC suite of tools. It provides core functions for +pycisTarget and SCENIC.") + (license license:gpl3+))) + (define-public vbz-compression (package (name "vbz-compression") |