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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-06-16 15:18:17 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-06-16 15:20:59 +0200 |
| commit | 3535d8dc5ae3116d8c3bedf0d5c920b19ba41cc5 (patch) | |
| tree | 99cd15c7e82111c0212778c14fb90e44972fdb07 | |
| parent | fbe5707b73a5c2e8432ebac2e28b80ad19d89c97 (diff) | |
| download | guix-patches-3535d8dc5ae3116d8c3bedf0d5c920b19ba41cc5.tar guix-patches-3535d8dc5ae3116d8c3bedf0d5c920b19ba41cc5.tar.gz | |
gnu: Add python-arboreto.
* gnu/packages/bioinformatics.scm (python-arboreto): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6dde6b6976..e6b14069ec 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13424,6 +13424,39 @@ files.") pycisTarget and SCENIC.") (license license:gpl3+))) +(define-public python-arboreto + (package + (name "python-arboreto") + (version "0.1.6") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/aertslab/arboreto") + (commit "2f475dca08f47a60acc2beb8dd897e77b7495ca4"))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0l0im8ay7l2d24f7vaha454vsaha9s36bfqhbijg3b8ir8apsd7l")))) + (build-system python-build-system) + ;; Lots of tests fail because python-distributed fails to start the + ;; "Nanny" process. + (arguments '(#:tests? #false)) + (propagated-inputs + (list python-bokeh + python-dask + python-distributed + python-numpy + python-pandas + python-scikit-learn + python-scipy + python-tornado-6)) + (home-page "https://github.com/aertslab/arboreto") + (synopsis "Gene regulatory network inference using tree-based ensemble regressors") + (description + "This package implements scalable gene regulatory network inference using +tree-based ensemble regressors.") + (license license:bsd-3))) + (define-public vbz-compression (package (name "vbz-compression") |