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author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2021-10-28 17:12:04 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2021-11-03 21:07:29 +0000 |
commit | 4f9f2539f33722dea184100270262420e4029045 (patch) | |
tree | 998c37999309f33094f2bb832d1a99a3f7ca4109 | |
parent | b36fc719536d01f63856ebce30b47773dddd543d (diff) | |
download | guix-patches-4f9f2539f33722dea184100270262420e4029045.tar guix-patches-4f9f2539f33722dea184100270262420e4029045.tar.gz |
gnu: Add r-zellkonverter.
* gnu/packages/bioconductor.scm (r-zellkonverter): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
-rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 75f6c877b4..936be1476a 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4682,6 +4682,38 @@ and specific in detecting differential transcription.") libraries for systems that do not have these available via other means.") (license license:artistic2.0))) +(define-public r-zellkonverter + (package + (name "r-zellkonverter") + (version "1.4.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "zellkonverter" version)) + (sha256 + (base32 "1ihp2f23lpdfgf3qliy22vrq8czm353hyhqf74r5r712190k6pgg")))) + (properties `((upstream-name . "zellkonverter"))) + (build-system r-build-system) + (propagated-inputs + `(("r-basilisk" ,r-basilisk) + ("r-cli" ,r-cli) + ("r-delayedarray" ,r-delayedarray) + ("r-matrix" ,r-matrix) + ("r-reticulate" ,r-reticulate) + ("r-s4vectors" ,r-s4vectors) + ("r-singlecellexperiment" ,r-singlecellexperiment) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/theislab/zellkonverter") + (synopsis "Conversion between AnnData and single-cell experiments objects") + (description + "This package provides methods to convert between Python AnnData objects +and SingleCellExperiment objects. These are primarily intended for use by +downstream Bioconductor packages that wrap Python methods for single-cell data +analysis. It also includes functions to read and write H5AD files used for +saving AnnData objects to disk.") + (license license:expat))) + (define-public r-geneplotter (package (name "r-geneplotter") |