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| author | Maxim Cournoyer <maxim.cournoyer@gmail.com> | 2021-01-29 10:53:45 -0500 |
|---|---|---|
| committer | Maxim Cournoyer <maxim.cournoyer@gmail.com> | 2021-01-29 10:58:25 -0500 |
| commit | 23a5dcce1d893b8f5c5301ae3c1af863776ed3cf (patch) | |
| tree | bb7e6c8d106961fdcb632c27abea54de3b754249 | |
| parent | de8dc9039b532f938074eb8504c63d3755d92eb6 (diff) | |
| download | guix-patches-23a5dcce1d893b8f5c5301ae3c1af863776ed3cf.tar guix-patches-23a5dcce1d893b8f5c5301ae3c1af863776ed3cf.tar.gz | |
gnu: grocsvs: Remove package.
This package depends on Python 2 and doesn't build anymore. Upstream doesn't
seem active, but if they ever port it to Python 3, they should let people know
here: https://github.com/grocsvs/grocsvs/issues/6.
* gnu/packages/bioinformatics.scm (grocsvs): Delete.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 41 |
1 files changed, 0 insertions, 41 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 161767c671..5b14e765de 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -15607,44 +15607,3 @@ biological processes. SBML is useful for models of metabolism, cell signaling, and more. It continues to be evolved and expanded by an international community.") (license license:lgpl2.1+))) - -(define-public grocsvs - ;; The last release is out of date and new features have been added. - (let ((commit "ecd956a65093a0b2c41849050e4512d46fecea5d") - (revision "1")) - (package - (name "grocsvs") - (version (git-version "0.2.6.1" revision commit)) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/grocsvs/grocsvs") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 "14505725gr7qxc17cxxf0k6lzcwmgi64pija4mwf29aw70qn35cc")) - (patches (search-patches "grocsvs-dont-use-admiral.patch")))) - (build-system python-build-system) - (arguments - `(#:tests? #f ; No test suite. - #:python ,python-2)) ; Only python-2 supported. - (inputs - `(("python2-h5py" ,python2-h5py) - ("python2-ipython-cluster-helper" ,python2-ipython-cluster-helper) - ("python2-networkx" ,python2-networkx) - ("python2-psutil" ,python2-psutil) - ("python2-pandas" ,python2-pandas) - ("python2-pybedtools" ,python2-pybedtools) - ("python2-pyfaidx" ,python2-pyfaidx) - ("python2-pygraphviz" ,python2-pygraphviz) - ("python2-pysam" ,python2-pysam) - ("python2-scipy" ,python2-scipy))) - (home-page "https://github.com/grocsvs/grocsvs") - (synopsis "Genome-wide reconstruction of complex structural variants") - (description - "@dfn{Genome-wide Reconstruction of Complex Structural Variants} -(GROC-SVs) is a software pipeline for identifying large-scale structural -variants, performing sequence assembly at the breakpoints, and reconstructing -the complex structural variants using the long-fragment information from the -10x Genomics platform.") - (license license:expat)))) |