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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-08-04 13:03:16 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-08-04 13:04:04 +0200 |
| commit | 75ec0fa243c5d97ee51deadf3703e10f6f8459fe (patch) | |
| tree | d4c79947940142afc6e7fdc07ca9332df4c12873 | |
| parent | 567922b9b5d461ad8f8f7aebc11ec504ec7eccaf (diff) | |
| download | guix-patches-75ec0fa243c5d97ee51deadf3703e10f6f8459fe.tar guix-patches-75ec0fa243c5d97ee51deadf3703e10f6f8459fe.tar.gz | |
gnu: Add r-tximeta.
* gnu/packages/bioconductor.scm (r-tximeta): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b3bd174764..e6adb2a652 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13661,3 +13661,44 @@ starting site, start codon, stop codon and transcription ending site.") "This package provides flexible, quantitative, and integrative genomic visualizations for publication-quality multi-panel figures.") (license license:gpl2+))) + +(define-public r-tximeta + (package + (name "r-tximeta") + (version "1.10.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "tximeta" version)) + (sha256 + (base32 + "0ipgpcl93cac4qff6lp9x2l3gav5kb1x1d56g32h09hlm797rvvh")))) + (properties `((upstream-name . "tximeta"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-annotationhub" ,r-annotationhub) + ("r-biocfilecache" ,r-biocfilecache) + ("r-biostrings" ,r-biostrings) + ("r-ensembldb" ,r-ensembldb) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-jsonlite" ,r-jsonlite) + ("r-matrix" ,r-matrix) + ("r-s4vectors" ,r-s4vectors) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-tibble" ,r-tibble) + ("r-tximport" ,r-tximport))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/mikelove/tximeta") + (synopsis "Transcript quantification import with automatic metadata") + (description + "This package implements transcript quantification import from Salmon and +alevin with automatic attachment of transcript ranges and release information, +and other associated metadata. De novo transcriptomes can be linked to the +appropriate sources with linkedTxomes and shared for computational +reproducibility.") + (license license:gpl2))) |