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authorRicardo Wurmus <rekado@elephly.net>2022-05-28 17:03:02 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-05-28 23:19:48 +0200
commit66bfe558481a2431810d7a2d2436d06d6f8daab7 (patch)
treed2a18c277489806ba44fff27675ab90d8df9ceda
parent79158a5624a587395e36125ad5d0cc369c841af4 (diff)
downloadguix-patches-66bfe558481a2431810d7a2d2436d06d6f8daab7.tar
guix-patches-66bfe558481a2431810d7a2d2436d06d6f8daab7.tar.gz
gnu: Add r-msdata.
* gnu/packages/bioconductor.scm (r-msdata): New variable.
-rw-r--r--gnu/packages/bioconductor.scm23
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index be946ae667..518224306f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1361,6 +1361,29 @@ genomation package. Included are Chip Seq, Methylation and Cage data,
downloaded from Encode.")
(license license:gpl3+)))
+(define-public r-msdata
+ (package
+ (name "r-msdata")
+ (version "0.36.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "msdata" version 'experiment))
+ (sha256
+ (base32 "0nqb7d7fa9l15bxy3s9wmy2h79jb6ldwww0hzk5mifabacmzx691"))))
+ (properties `((upstream-name . "msdata")))
+ (build-system r-build-system)
+ (home-page "https://bioconductor.org/packages/msdata")
+ (synopsis "Various Mass Spectrometry raw data example files")
+ (description
+ "This package provides Ion Trap positive ionization mode data in mzML file
+format. It includes a subset from 500-850 m/z and 1190-1310 seconds,
+including MS2 and MS3, intensity threshold 100.000; extracts from FTICR Apex
+III, m/z 400-450; a subset of UPLC - Bruker micrOTOFq data, both mzML and mz5;
+LC-MSMS and MRM files from proteomics experiments; and PSI mzIdentML example
+files for various search engines.")
+ (license license:gpl2+)))
+
(define-public r-pasilla
(package
(name "r-pasilla")