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| author | Maxim Cournoyer <maxim.cournoyer@gmail.com> | 2022-04-18 20:09:37 -0400 |
|---|---|---|
| committer | Maxim Cournoyer <maxim.cournoyer@gmail.com> | 2022-05-12 12:45:55 -0400 |
| commit | 34106c85d8a95c92d110bb657f09ada36401ff29 (patch) | |
| tree | 5962e0159938ef0d28f0b6fb8aab44974baf77e2 | |
| parent | 06b0512260b366513c7f3c3e8f9a6b298da968b7 (diff) | |
| download | guix-patches-34106c85d8a95c92d110bb657f09ada36401ff29.tar guix-patches-34106c85d8a95c92d110bb657f09ada36401ff29.tar.gz | |
gnu: python-umap-learn: Update to 0.5.3.
* gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.3.
[source]: Use git.
[arguments]: New field.
[native-inputs]: Delete python-joblib and python-nose. Add python-pytest.
[propagated-inputs]: Add python-pynndescent and python-tqdm.
[synopsis]: Fix indentation.
[description]: Fix typo and re-indent.
| -rw-r--r-- | gnu/packages/machine-learning.scm | 40 |
1 files changed, 27 insertions, 13 deletions
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 5f14453f01..3897342345 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -2796,26 +2796,40 @@ These include a barrier, broadcast, and allreduce.") (define-public python-umap-learn (package (name "python-umap-learn") - (version "0.3.10") + (version "0.5.3") (source (origin - (method url-fetch) - (uri (pypi-uri "umap-learn" version)) + (method git-fetch) ;no tests in pypi release + (uri (git-reference + (url "https://github.com/lmcinnes/umap") + (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "02ada2yy6km6zgk2836kg1c97yrcpalvan34p8c57446finnpki1")))) + "1315jkb0h1b579y9m59632f0nnpksilm01nxx46in0rq8zna8vsb")))) (build-system python-build-system) - (native-inputs - (list python-joblib python-nose)) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (setenv "HOME" "/tmp") + (invoke "pytest" "-vv" "umap"))))))) + (native-inputs (list python-pytest)) (propagated-inputs - (list python-numba python-numpy python-scikit-learn python-scipy)) + (list python-numba + python-numpy + python-pynndescent + python-scikit-learn + python-scipy + python-tqdm)) (home-page "https://github.com/lmcinnes/umap") - (synopsis - "Uniform Manifold Approximation and Projection") - (description - "Uniform Manifold Approximation and Projection is a dimension reduction -technique that can be used for visualisation similarly to t-SNE, but also for -general non-linear dimension reduction.") + (synopsis "Uniform Manifold Approximation and Projection") + (description "Uniform Manifold Approximation and Projection is a dimension +reduction technique that can be used for visualization similarly to t-SNE, but +also for general non-linear dimension reduction.") (license license:bsd-3))) (define-public nnpack |