diff options
| author | Arun Isaac <arunisaac@systemreboot.net> | 2022-04-26 18:16:35 +0530 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2022-05-09 11:17:51 +0300 |
| commit | 713dadf47e2ceeaa86487709df74a6746f3e86e4 (patch) | |
| tree | 3e0bd6c5e0d2eddf6bdec19151e980cb355db57c | |
| parent | 086c7c143c93f00690711f42b960c5bd91ed4009 (diff) | |
| download | guix-patches-713dadf47e2ceeaa86487709df74a6746f3e86e4.tar guix-patches-713dadf47e2ceeaa86487709df74a6746f3e86e4.tar.gz | |
gnu: fastahack: Use G-expressions.
* gnu/packages/bioinformatics.scm (fastahack)[arguments]: Rewrite
using G-expressions. Do not return #t from custom phases.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 60 |
1 files changed, 29 insertions, 31 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 66900f3883..c2caa507e4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14502,36 +14502,35 @@ neural networks.") (base32 "0rp1blskhzxf7vbh253ibpxbgl9wwgyzf1wbkxndi08d3j4vcss9")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ; Unclear how to run tests: https://github.com/ekg/fastahack/issues/15 - #:phases - (modify-phases %standard-phases - (delete 'configure) ; There is no configure phase. - (add-after 'unpack 'patch-source - (lambda _ - (substitute* "Makefile" - (("-c ") "-c -fPIC ")) - #t)) - (add-after 'build 'build-dynamic - (lambda _ - (invoke "g++" - "-shared" "-o" "libfastahack.so" - "Fasta.o" "FastaHack.o" "split.o" "disorder.o"))) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (lib (string-append out "/lib")) - (bin (string-append out "/bin"))) - (mkdir-p (string-append out "/include/fastahack")) - (for-each - (lambda (file) - (install-file file (string-append out "/include/fastahack"))) - (find-files "." "\\.h$")) - (install-file "fastahack" bin) - (install-file "libfastahack.so" lib) - (mkdir-p (string-append lib "/pkgconfig")) - (with-output-to-file (string-append lib "/pkgconfig/fastahack.pc") + (list #:tests? #f ; Unclear how to run tests: https://github.com/ekg/fastahack/issues/15 + #:phases + #~(modify-phases %standard-phases + (delete 'configure) ; There is no configure phase. + (add-after 'unpack 'patch-source (lambda _ - (format #t "prefix=~a~@ + (substitute* "Makefile" + (("-c ") "-c -fPIC ")))) + (add-after 'build 'build-dynamic + (lambda _ + (invoke "g++" + "-shared" "-o" "libfastahack.so" + "Fasta.o" "FastaHack.o" "split.o" "disorder.o"))) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (lib (string-append out "/lib")) + (bin (string-append out "/bin"))) + (mkdir-p (string-append out "/include/fastahack")) + (for-each + (lambda (file) + (install-file file (string-append out "/include/fastahack"))) + (find-files "." "\\.h$")) + (install-file "fastahack" bin) + (install-file "libfastahack.so" lib) + (mkdir-p (string-append lib "/pkgconfig")) + (with-output-to-file (string-append lib "/pkgconfig/fastahack.pc") + (lambda _ + (format #t "prefix=~a~@ exec_prefix=${prefix}~@ libdir=${exec_prefix}/lib~@ includedir=${prefix}/include/fastahack~@ @@ -14542,8 +14541,7 @@ neural networks.") Description: Indexing and sequence extraction from FASTA files~@ Libs: -L${libdir} -lfastahack~@ Cflags: -I${includedir}~%" - out ,version)))) - #t))))) + out #$version))))))))) (home-page "https://github.com/ekg/fastahack") (synopsis "Indexing and sequence extraction from FASTA files") (description "Fastahack is a small application for indexing and |