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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-04-26 09:47:51 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-04-26 09:48:14 +0200 |
| commit | 33fe027f91062926c513c3b5f9a91ae761810f89 (patch) | |
| tree | 5e33b2b6973de024e6f48ebdd3924d9536680acc | |
| parent | b79431b5e98d33c23dea808d0aa9fd847e1471ab (diff) | |
| download | guix-patches-33fe027f91062926c513c3b5f9a91ae761810f89.tar guix-patches-33fe027f91062926c513c3b5f9a91ae761810f89.tar.gz | |
gnu: Add r-giotto.
* gnu/packages/bioinformatics.scm (r-giotto): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 58 |
1 files changed, 58 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4634b86515..40ccba247c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11972,6 +11972,64 @@ cells with similar identification cards in the different cytometric profiles is then merged.") (license license:gpl2)))) +(define-public r-giotto + (let ((commit "68d7390dce87223cac11d4d8f31705fe0144d011") + (revision "1")) + (package + (name "r-giotto") + (version (git-version "1.1.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/RubD/Giotto/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0mv60khc05wrxzr4ir6cirn7dpqvgwan5hm00lmafsyalr51nf5i")))) + (properties `((upstream-name . "Giotto"))) + (build-system r-build-system) + (propagated-inputs + (list r-clusterr + r-complexheatmap + r-cowplot + r-data-table + r-dbscan + r-deldir + r-farver + r-fitdistrplus + r-ggdendro + r-ggplot2 + r-ggraph + r-ggrepel + r-igraph + r-irlba + r-lfa + r-limma + r-magick + r-magrittr + r-matrix + r-matrixstats + r-plotly + r-qvalue + r-r-utils + r-rcolorbrewer + r-rcpp + r-reshape2 + r-reticulate + r-rfast + r-rlang + r-rtsne + r-scales + r-uwot)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/RubD/Giotto/") + (synopsis "Spatial single-cell transcriptomics toolbox") + (description + "This package provides a toolbox to process, analyze and visualize +spatial single-cell expression data.") + (license license:expat)))) + (define-public gffread ;; We cannot use the tagged release because it is not in sync with gclib. ;; See https://github.com/gpertea/gffread/issues/26 |