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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-04-26 16:43:47 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-04-26 16:50:32 +0200 |
| commit | 1c3c00a8a19780290e35bf176691fbd93ac617ac (patch) | |
| tree | b691b6880402a0708a3e388dc42dde6e5ebd65b8 | |
| parent | 58f3727767dc6b7ffd27d9cea87cf391845bbba6 (diff) | |
| download | guix-patches-1c3c00a8a19780290e35bf176691fbd93ac617ac.tar guix-patches-1c3c00a8a19780290e35bf176691fbd93ac617ac.tar.gz | |
gnu: Add bart.
* gnu/packages/image-processing.scm (bart): New variable.
| -rw-r--r-- | gnu/packages/image-processing.scm | 53 |
1 files changed, 52 insertions, 1 deletions
diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm index ba6b522f52..1995f71cc2 100644 --- a/gnu/packages/image-processing.scm +++ b/gnu/packages/image-processing.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2017 John Darrington <jmd@gnu.org> -;;; Copyright © 2017, 2019 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2017, 2019, 2022 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2014, 2021-2022 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2014 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org> @@ -38,6 +38,7 @@ (define-module (gnu packages image-processing) #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) + #:use-module (guix gexp) #:use-module (guix utils) #:use-module (guix download) #:use-module (guix git-download) @@ -69,6 +70,7 @@ #:use-module (gnu packages icu4c) #:use-module (gnu packages image) #:use-module (gnu packages imagemagick) + #:use-module (gnu packages linux) #:use-module (gnu packages maths) #:use-module (gnu packages pdf) #:use-module (gnu packages perl) @@ -91,6 +93,55 @@ #:use-module (ice-9 match) #:use-module (srfi srfi-1)) +;; TODO: this is not reproducible. +(define-public bart + (package + (name "bart") + (version "0.7.00") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/mrirecon/bart") + (commit "d1b0e576c3f759089915565d5bf57832acf7b03e"))) + (file-name (git-file-name name version)) + (sha256 + (base32 "159rj3agr9pb9lg38b56rnw3d8wcbkmb2n718z26zpy4c6a6d9rn")))) + (build-system gnu-build-system) + (arguments + (list + #:test-target "utest" + #:make-flags #~(list + (string-append "PREFIX=" #$output) + "OPENBLAS=1" + "SCALAPACK=1" + (string-append "BLAS_BASE=" #$(this-package-input "openblas")) + (string-append "FFTW_BASE=" #$(this-package-input "fftw"))) + #:phases + #~(modify-phases %standard-phases + (delete 'configure) + (add-after 'unpack 'patch-/bin/bash + (lambda _ + (substitute* "tests/pics.mk" + (("/bin/bash") (which "bash")))))))) + (inputs + (list fftw + fftwf + libpng + openblas + python + scalapack)) + (native-inputs + (list doxygen + util-linux)) ;for flock + (home-page "https://mrirecon.github.io/bart/") + (synopsis "Toolbox for computational magnetic resonance imaging") + (description "The Berkeley Advanced Reconstruction Toolbox (BART) is an +image-reconstruction framework for Computational Magnetic Resonance Imaging. +The tools in this software implement various reconstruction algorithms for +Magnetic Resonance Imaging.") + (license license:bsd-3))) + (define-public dcmtk (package (name "dcmtk") |