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authorRicardo Wurmus <rekado@elephly.net>2022-04-14 13:35:22 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-04-14 13:35:22 +0200
commitc8a6e4abbc4f279f919017d238576cf8724e9456 (patch)
treed4714c79605af7cb1b913fa5af41ccf7199b0b59
parentaafd0d2309a7f27dc0f724f682c4faede41cf6c2 (diff)
downloadguix-patches-c8a6e4abbc4f279f919017d238576cf8724e9456.tar
guix-patches-c8a6e4abbc4f279f919017d238576cf8724e9456.tar.gz
gnu: r-chromvarmotifs: Move to (gnu packages bioinformatics).
* gnu/packages/bioconductor.scm (r-chromvarmotifs): Move this variable from here... * gnu/packages/bioinformatics.scm (r-chromvarmotifs): ...to here.
-rw-r--r--gnu/packages/bioconductor.scm28
-rw-r--r--gnu/packages/bioinformatics.scm28
2 files changed, 28 insertions, 28 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ecb188a84f..f795b6ad9c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1211,34 +1211,6 @@ single-cell data or deconvolution of bulk RNA-seq.")
chromstaR package.")
(license license:gpl3)))
-(define-public r-chromvarmotifs
- (let ((commit "38bed559c1f4770b6c91c80bf3f8ea965da26076")
- (revision "1"))
- (package
- (name "r-chromvarmotifs")
- (version (git-version "0.2.0" revision commit))
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/GreenleafLab/chromVARmotifs")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0i9v1m1hrg1lkd2pnkj5nnrpks6vhhhpbdhsfl2lmjak4npxxr5q"))))
- (properties `((upstream-name . "chromVARmotifs")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-tfbstools" ,r-tfbstools)))
- (home-page "https://github.com/GreenleafLab/chromVARmotifs")
- (synopsis "Stores motif collections for use with motifmatchr or chromVAR")
- (description
- "This package stores motif collections as lists of @dfn{position
-frequency matrix} (PWMatrixList) objects provided by the @code{TFBSTools}
-package for use in R with packages like @code{motifmatchr} or
-@code{chromVAR}.")
- (license license:expat))))
-
(define-public r-copyhelper
(package
(name "r-copyhelper")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e3bbdaa380..b838c2dbfa 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8981,6 +8981,34 @@ analysis, variant tools is project based and provides a whole set of tools to
manipulate and analyze genetic variants.")
(license license:gpl3+)))
+(define-public r-chromvarmotifs
+ (let ((commit "38bed559c1f4770b6c91c80bf3f8ea965da26076")
+ (revision "1"))
+ (package
+ (name "r-chromvarmotifs")
+ (version (git-version "0.2.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/GreenleafLab/chromVARmotifs")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0i9v1m1hrg1lkd2pnkj5nnrpks6vhhhpbdhsfl2lmjak4npxxr5q"))))
+ (properties `((upstream-name . "chromVARmotifs")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-tfbstools" ,r-tfbstools)))
+ (home-page "https://github.com/GreenleafLab/chromVARmotifs")
+ (synopsis "Stores motif collections for use with motifmatchr or chromVAR")
+ (description
+ "This package stores motif collections as lists of @dfn{position
+frequency matrix} (PWMatrixList) objects provided by the @code{TFBSTools}
+package for use in R with packages like @code{motifmatchr} or
+@code{chromVAR}.")
+ (license license:expat))))
+
(define-public r-raremetals2
(package
(name "r-raremetals2")