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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-27 15:45:35 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-27 16:17:20 +0100 |
| commit | f8295ee6dea95eec54196c967f034a1597e45e70 (patch) | |
| tree | 11fad5ec6e055fb35af57bdf1d0697cfe7ee446d | |
| parent | 9c30cf65d2b2f1f529f9e7dc4ea58e14b3035f9e (diff) | |
| download | guix-patches-f8295ee6dea95eec54196c967f034a1597e45e70.tar guix-patches-f8295ee6dea95eec54196c967f034a1597e45e70.tar.gz | |
gnu: Add r-clusterprofiler.
* gnu/packages/bioconductor.scm (r-clusterprofiler): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 098cee8100..46d1880ccb 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2849,3 +2849,36 @@ data.") interpreting functional enrichment results obtained from ORA or GSEA analyses. All the visualization methods are developed based on ggplot2 graphics.") (license license:artistic2.0))) + +(define-public r-clusterprofiler + (package + (name "r-clusterprofiler") + (version "3.10.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "clusterProfiler" version)) + (sha256 + (base32 + "1v4fh8ll7zk8yhbaa0nq9xvqrb05kyvbpwkqpnjf07s873805rxm")))) + (properties + `((upstream-name . "clusterProfiler"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-dose" ,r-dose) + ("r-enrichplot" ,r-enrichplot) + ("r-ggplot2" ,r-ggplot2) + ("r-go-db" ,r-go-db) + ("r-gosemsim" ,r-gosemsim) + ("r-magrittr" ,r-magrittr) + ("r-plyr" ,r-plyr) + ("r-qvalue" ,r-qvalue) + ("r-rvcheck" ,r-rvcheck) + ("r-tidyr" ,r-tidyr))) + (home-page "https://guangchuangyu.github.io/software/clusterProfiler/") + (synopsis "Analysis and visualization of functional profiles for gene clusters") + (description + "This package implements methods to analyze and visualize functional +profiles (GO and KEGG) of gene and gene clusters.") + (license license:artistic2.0))) |