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author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2018-02-14 14:27:50 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2018-02-15 17:18:54 +0100 |
commit | 3082de04c2b193bf2db2312c9ea28c18bb28bdf4 (patch) | |
tree | 1040d18f0c0c9b6b0ec7b6fe703729b72b6ead22 | |
parent | 05f7296012b8a4bd6429abcaf6ff5000033a44c1 (diff) | |
download | guix-patches-3082de04c2b193bf2db2312c9ea28c18bb28bdf4.tar guix-patches-3082de04c2b193bf2db2312c9ea28c18bb28bdf4.tar.gz |
gnu: Add r-dropbead.
* gnu/packages/bioinformatics.scm (r-dropbead): New variable.
-rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 548b045599..0206eb35b5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10658,6 +10658,35 @@ are optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.") (license license:expat))) +(define-public r-dropbead + (let ((commit "cf0be5ae5302684bd03e78ab65b142900bbbb840") + (revision "1")) + (package + (name "r-dropbead") + (version (string-append "0-" revision "." (string-take commit 7))) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/rajewsky-lab/dropbead.git") + (commit commit))) + (sha256 + (base32 + "1b2lphsc236s1rdzlijxg8yl1jnqpwcvj4x938r89rqpj93jb780")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-gridextra" ,r-gridextra) + ("r-gplots" ,r-gplots) + ("r-plyr" ,r-plyr))) + (home-page "https://github.com/rajewsky-lab/dropbead") + (synopsis "Basic exploration and analysis of Drop-seq data") + (description "This package offers a quick and straight-forward way to +explore and perform basic analysis of single cell sequencing data coming from +droplet sequencing. It has been particularly tailored for Drop-seq.") + (license license:gpl3)))) + (define htslib-for-sambamba (let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5")) (package |