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author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2018-02-14 14:28:00 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2018-02-15 17:19:00 +0100 |
commit | 152d30c34690c00cc96053a9ae6196b26e93ba84 (patch) | |
tree | 7900a478a15426a0c5a98fb43fff44cf60a0d7e7 | |
parent | 3082de04c2b193bf2db2312c9ea28c18bb28bdf4 (diff) | |
download | guix-patches-152d30c34690c00cc96053a9ae6196b26e93ba84.tar guix-patches-152d30c34690c00cc96053a9ae6196b26e93ba84.tar.gz |
gnu: Add python-loompy.
* gnu/packages/bioinformatics.scm (python-loompy): New variable.
-rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0206eb35b5..f790737f5e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11857,3 +11857,31 @@ use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference.") (license license:gpl3+))) + +(define-public python-loompy + (package + (name "python-loompy") + (version "2.0.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "loompy" version)) + (sha256 + (base32 + "1drgv8j1hxqzzpnfg272x9djb6j8qr798w1pc2x8ikmfgyd9gh51")))) + (build-system python-build-system) + ;; There are no tests + (arguments '(#:tests? #f)) + (propagated-inputs + `(("python-h5py" ,python-h5py) + ("python-numpy" ,python-numpy) + ("python-scipy" ,python-scipy) + ("python-typing" ,python-typing))) + (home-page "https://github.com/linnarsson-lab/loompy") + (synopsis "Work with .loom files for single-cell RNA-seq data") + (description "The loom file format is an efficient format for very large +omics datasets, consisting of a main matrix, optional additional layers, a +variable number of row and column annotations. Loom also supports sparse +graphs. This library makes it easy to work with @file{.loom} files for +single-cell RNA-seq data.") + (license license:bsd-3))) |