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| author | zimoun <zimon.toutoune@gmail.com> | 2021-05-21 22:25:45 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-05-31 15:37:55 +0200 |
| commit | d7fa9c1ffdbd0ab4d4412020c925be39503ce9e8 (patch) | |
| tree | 7288e40d4be2054317f24c9c6c6f3e688f2b34ce | |
| parent | f8fe5497c7b9f598786d46d96fd1bd5002e7e57f (diff) | |
| download | guix-patches-d7fa9c1ffdbd0ab4d4412020c925be39503ce9e8.tar guix-patches-d7fa9c1ffdbd0ab4d4412020c925be39503ce9e8.tar.gz | |
gnu: r-genomationdata: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomationdata): Move from here...
* gnu/packages/bioconductor.scm (r-genomationdata): ...to here.
[source]: Replace 'string-append' by 'bioconductor-uri' with 'experiment.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 26 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
2 files changed, 26 insertions, 28 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b90e315267..b25cc8e019 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1170,6 +1170,32 @@ genomes and gene ID formats, largely based on the UCSC table browser.") and visualize the results.") (license license:gpl3))) +(define-public r-genomationdata + (package + (name "r-genomationdata") + (version "1.22.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "genomationData" version 'experiment)) + (sha256 + (base32 + "0igjsvfnws3498j65ifniw0kbxfqpfr59rcjddqvq4zsj453fx1g")))) + (properties + `((upstream-name . "genomationData"))) + (build-system r-build-system) + ;; As this package provides little more than large data files, it doesn't + ;; make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioinformatics.mdc-berlin.de/genomation/") + (synopsis "Experimental data for use with the genomation package") + (description + "This package contains experimental genetic data for use with the +genomation package. Included are Chip Seq, Methylation and Cage data, +downloaded from Encode.") + (license license:gpl3+))) + (define-public r-pasilla (package (name "r-pasilla") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cc6e1b1594..1b94b62b1d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8023,34 +8023,6 @@ used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.") (license license:bsd-3))) -(define-public r-genomationdata - (package - (name "r-genomationdata") - (version "1.22.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://bioconductor.org/packages/" - "release/data/experiment/src/contrib/" - "genomationData_" version ".tar.gz")) - (sha256 - (base32 - "0igjsvfnws3498j65ifniw0kbxfqpfr59rcjddqvq4zsj453fx1g")))) - (build-system r-build-system) - ;; As this package provides little more than large data files, it doesn't - ;; make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioinformatics.mdc-berlin.de/genomation/") - (synopsis "Experimental data for use with the genomation package") - (description - "This package contains experimental genetic data for use with the -genomation package. Included are Chip Seq, Methylation and Cage data, -downloaded from Encode.") - (license license:gpl3+))) - (define-public r-seqlogo (package (name "r-seqlogo") |