summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorzimoun <zimon.toutoune@gmail.com>2021-05-21 22:25:53 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-05-31 15:37:58 +0200
commit32ae36e96f9b076901af94c723e3d156595d5bc5 (patch)
tree7d2befbe851bffff9285343af3e771507ac1a265
parent9644745692aa2407e66f2ce4671356c3231c462d (diff)
downloadguix-patches-32ae36e96f9b076901af94c723e3d156595d5bc5.tar
guix-patches-32ae36e96f9b076901af94c723e3d156595d5bc5.tar.gz
gnu: r-fastseg: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-fastseg): Move from here... * gnu/packages/bioconductor.scm (r-fastseg): ...to here.
-rw-r--r--gnu/packages/bioconductor.scm30
-rw-r--r--gnu/packages/bioinformatics.scm30
2 files changed, 30 insertions, 30 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 42a01a4dc3..07ce719d7d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2441,6 +2441,36 @@ other types of genomic data that produce counts, including ChIP-seq, SAGE and
CAGE.")
(license license:gpl2+)))
+(define-public r-fastseg
+ (package
+ (name "r-fastseg")
+ (version "1.36.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "fastseg" version))
+ (sha256
+ (base32
+ "1ln6w93ag4wanp0nrm0pqngbfc88w95zq2kcj583hbxy885dkg4f"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://www.bioinf.jku.at/software/fastseg/index.html")
+ (synopsis "Fast segmentation algorithm for genetic sequencing data")
+ (description
+ "Fastseg implements a very fast and efficient segmentation algorithm.
+It can segment data from DNA microarrays and data from next generation
+sequencing for example to detect copy number segments. Further it can segment
+data from RNA microarrays like tiling arrays to identify transcripts. Most
+generally, it can segment data given as a matrix or as a vector. Various data
+formats can be used as input to fastseg like expression set objects for
+microarrays or GRanges for sequencing data.")
+ (license license:lgpl2.0+)))
+
(define-public r-genefilter
(package
(name "r-genefilter")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 104a37acaa..54c3945489 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9196,36 +9196,6 @@ their variance is independent of the mean, and they are usually more sensitive
and specific in detecting differential transcription.")
(license license:artistic2.0)))
-(define-public r-fastseg
- (package
- (name "r-fastseg")
- (version "1.36.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "fastseg" version))
- (sha256
- (base32
- "1ln6w93ag4wanp0nrm0pqngbfc88w95zq2kcj583hbxy885dkg4f"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-genomicranges" ,r-genomicranges)
- ("r-iranges" ,r-iranges)
- ("r-s4vectors" ,r-s4vectors)))
- (home-page "https://www.bioinf.jku.at/software/fastseg/index.html")
- (synopsis "Fast segmentation algorithm for genetic sequencing data")
- (description
- "Fastseg implements a very fast and efficient segmentation algorithm.
-It can segment data from DNA microarrays and data from next generation
-sequencing for example to detect copy number segments. Further it can segment
-data from RNA microarrays like tiling arrays to identify transcripts. Most
-generally, it can segment data given as a matrix or as a vector. Various data
-formats can be used as input to fastseg like expression set objects for
-microarrays or GRanges for sequencing data.")
- (license license:lgpl2.0+)))
-
(define-public r-keggrest
(package
(name "r-keggrest")