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author | Ricardo Wurmus <rekado@elephly.net> | 2020-08-11 11:26:44 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2020-08-11 11:27:06 +0200 |
commit | 0b8c7e4bb5c6ca894d022bbd1a530be162f2bbfd (patch) | |
tree | a00f12dfdf335090b1603f5dbfe45b06cfef8563 | |
parent | 697e54b2a16575afa9457456fa2a27b0e5895caa (diff) | |
download | guix-patches-0b8c7e4bb5c6ca894d022bbd1a530be162f2bbfd.tar guix-patches-0b8c7e4bb5c6ca894d022bbd1a530be162f2bbfd.tar.gz |
gnu: Add r-m3c.
* gnu/packages/bioconductor.scm (r-m3c): New variable.
-rw-r--r-- | gnu/packages/bioconductor.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b191c8b4ae..8f5a4dffe7 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8116,3 +8116,36 @@ dimensional mass cytometry data.") Tool) analysis automatic by constructing a HTTP POST request according to user's input and automatically retrieving results from GREAT web server.") (license license:expat))) + +(define-public r-m3c + (package + (name "r-m3c") + (version "1.10.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "M3C" version)) + (sha256 + (base32 + "0zq8lm4280p8h65i7myscwa4srs5ajh944xv6zni2f5sjyp7ij2y")))) + (properties `((upstream-name . "M3C"))) + (build-system r-build-system) + (propagated-inputs + `(("r-cluster" ,r-cluster) + ("r-corpcor" ,r-corpcor) + ("r-doparallel" ,r-doparallel) + ("r-dosnow" ,r-dosnow) + ("r-foreach" ,r-foreach) + ("r-ggplot2" ,r-ggplot2) + ("r-matrix" ,r-matrix) + ("r-matrixcalc" ,r-matrixcalc) + ("r-rtsne" ,r-rtsne) + ("r-umap" ,r-umap))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/M3C") + (synopsis "Monte Carlo reference-based consensus clustering") + (description + "M3C is a consensus clustering algorithm that uses a Monte Carlo +simulation to eliminate overestimation of @code{K} and can reject the null +hypothesis @code{K=1}.") + (license license:agpl3+))) |