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author | pimi <madalinionel.patrascu@mdc-berlin.de> | 2018-09-30 14:08:42 -0400 |
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committer | Leo Famulari <leo@famulari.name> | 2018-09-30 14:09:48 -0400 |
commit | f2bc53af70eea7b7147b9e7e40280941866ed128 (patch) | |
tree | eda411585616d9600f5e415a7e0a4f8dc9c7360a | |
parent | cebec8bd1ca3871dead210c2e8404e3f5cec8ab7 (diff) | |
download | guix-patches-f2bc53af70eea7b7147b9e7e40280941866ed128.tar guix-patches-f2bc53af70eea7b7147b9e7e40280941866ed128.tar.gz |
gnu: Add porechop.
* gnu/packages/bioinformatics.scm (porechop): New variable.
-rw-r--r-- | gnu/packages/bioinformatics.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index e74abf005f..b84498d042 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13869,3 +13869,33 @@ single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure.\" Baron et al. Cell Systems (2016) @url{https://www.ncbi.nlm.nih.gov/pubmed/27667365}.") (license license:gpl2+)))) + +(define-public porechop + ;; The recommended way to install is to clone the git repository + ;; https://github.com/rrwick/Porechop#installation + (let ((commit "289d5dca4a5fc327f97b3f8cecb68ecaf1014861") + (revision "1")) + (package + (name "porechop") + (version (git-version "0.2.3" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/rrwick/Porechop.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "05ps43gig0d3ia9x5lj84lb00hbsl6ba9n7y7jz927npxbr2ym23")))) + (build-system python-build-system) + (home-page "https://github.com/rrwick/porechop") + (synopsis "Finding, trimming or splitting adapters, in Oxford Nanopore reads") + (description + "The porechop package is a tool for finding and removing adapters from Oxford +Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read +has an adapter in its middle, it is treated as chimeric and chopped into +separate reads. Porechop performs thorough alignments to effectively find +adapters, even at low sequence identity. Porechop also supports demultiplexing +of Nanopore reads that were barcoded with the Native Barcoding Kit, PCR +Barcoding Kit or Rapid Barcoding Kit.") + (license license:gpl3+)))) |