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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-01-20 15:25:19 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-01-20 15:25:56 +0100 |
| commit | d99e42d7f62beab57f1bc2a6aef69b3dd8cd1072 (patch) | |
| tree | da9838329fb124e6326c2ee29961f1005cef0917 | |
| parent | 15b509e6545d093909569c716ed05453f1af47cf (diff) | |
| download | guix-patches-d99e42d7f62beab57f1bc2a6aef69b3dd8cd1072.tar guix-patches-d99e42d7f62beab57f1bc2a6aef69b3dd8cd1072.tar.gz | |
gnu: samtools-0.1: Install headers and library.
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Add build phases
'install-library and 'install-headers.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 19 |
1 files changed, 18 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 357baa289b..7e28ae8ed1 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft <donttrustben@gmail.com> ;;; Copyright © 2015, 2016, 2018, 2019, 2020 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> @@ -6316,6 +6316,11 @@ viewer.") #:make-flags (list "LIBCURSES=-lncurses") ,@(substitute-keyword-arguments (package-arguments samtools) + ((#:modules _ #f) + '((ice-9 ftw) + (ice-9 regex) + (guix build gnu-build-system) + (guix build utils))) ((#:phases phases) `(modify-phases ,phases (replace 'install @@ -6325,6 +6330,18 @@ viewer.") (mkdir-p bin) (install-file "samtools" bin) #t))) + (add-after 'install 'install-library + (lambda* (#:key outputs #:allow-other-keys) + (let ((lib (string-append (assoc-ref outputs "out") "/lib"))) + (install-file "libbam.a" lib)))) + (add-after 'install 'install-headers + (lambda* (#:key outputs #:allow-other-keys) + (let ((include (string-append (assoc-ref outputs "out") + "/include/samtools/"))) + (for-each (lambda (file) + (install-file file include)) + (scandir "." (lambda (name) + (string-match "\\.h$" name))))))) (delete 'patch-tests) (delete 'configure)))))))) |