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author | Ricardo Wurmus <rekado@elephly.net> | 2021-05-20 10:53:21 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2021-05-20 10:58:14 +0200 |
commit | c88e05b2db9caf71b99c9e5cefcec9d2127f7799 (patch) | |
tree | ef0cca7693aaae08c59df0654b33aa35124c547e | |
parent | 191e2347c503a6f32c0f8dd9978b0317be608bdd (diff) | |
download | guix-patches-c88e05b2db9caf71b99c9e5cefcec9d2127f7799.tar guix-patches-c88e05b2db9caf71b99c9e5cefcec9d2127f7799.tar.gz |
gnu: Add r-babelgene.
* gnu/packages/cran.scm (r-babelgene): New variable.
-rw-r--r-- | gnu/packages/cran.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 023d726fe0..d71b7f6aa6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -16309,6 +16309,37 @@ The extrafont package makes both of these things easier.") the XKCD web comic.") (license license:gpl3))) +(define-public r-babelgene + (package + (name "r-babelgene") + (version "21.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "babelgene" version)) + (sha256 + (base32 + "1gk5pm3b3shr1id66a11ywc1b823gbj8yckg24szzfhj8g4ixyf0")))) + (properties `((upstream-name . "babelgene"))) + (build-system r-build-system) + (propagated-inputs + `(("r-dplyr" ,r-dplyr) + ("r-rlang" ,r-rlang))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page + "https://igordot.github.io/babelgene/") + (synopsis "Gene orthologs for model organisms in a Tidy data format") + (description + "Genomic analysis of model organisms often requires the use of databases +based on human data or making comparisons to patient-derived resources. This +requires converting genes between human and non-human analogues. The +babelgene R package provides predicted gene orthologs/homologs for frequently +studied model organisms in an R-friendly tidy/long format. The package +integrates orthology assertion predictions sourced from multiple databases as +compiled by the HGNC Comparison of Orthology Predictions (HCOP).") + (license license:expat))) + (define-public r-msigdbr (package (name "r-msigdbr") |