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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-03-15 18:31:23 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-03-15 18:31:23 +0100 |
| commit | 4496ff34a31cad104cf43e4860b9df7014a9d98e (patch) | |
| tree | b8035d96bf911e49eccbd7ce2571314b0835bbbd | |
| parent | 8309556cf34f1fc546251b796076e305da113eea (diff) | |
| download | guix-patches-4496ff34a31cad104cf43e4860b9df7014a9d98e.tar guix-patches-4496ff34a31cad104cf43e4860b9df7014a9d98e.tar.gz | |
gnu: Add r-conqur.
* gnu/packages/bioinformatics.scm (r-conqur): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c1e1cd2df5..35df225cde 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -777,6 +777,47 @@ each with 3000 cells. There are two samples which are bone marrow (BM), and two samples which are cord blood (CB).") (license license:gpl3)))) +(define-public r-conqur + (let ((commit "c7a88794efd4ecfe4d96988dceeec3b410222e48") + (revision "1")) + (package + (name "r-conqur") + (version (git-version "2.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/wdl2459/ConQuR") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "19a7p2l67mgjy99i5ksjxlhzaqmrnyi1vzvwnhgnx2jrr6crj7rq")))) + (properties `((upstream-name . "ConQuR"))) + (build-system r-build-system) + (propagated-inputs (list r-ade4 + r-ape + r-compositions + r-cqrreg + r-doparallel + r-dplyr + r-fastdummies + r-glmnet + r-gplots + r-gunifrac + r-quantreg + r-randomforest + r-rocr + r-vegan)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/wdl2459/ConQuR") + (synopsis "Batch effects removal for microbiome data") + (description + "This package conducts batch effects removal from a taxa read count +table by a conditional quantile regression method. The distributional +attributes of microbiome data - zero-inflation and over-dispersion, are +simultaneously considered.") + (license license:gpl3)))) + (define-public r-p2data (let ((commit "7d4c0e17d7899f9d9b08ab2bf455abe150912f4c") (revision "1")) |